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The examination of SNPs has undergone a recent change, and in response to this change, RGD has released the new Variant Visualizer tool (VarVis), taking the place of the old SNPlotyper tool. VarVis is a visualization and analysis tool for sequence variation. The data currently contains 22 rat strains sequenced by 4 independent labs.

The Gene Annotator takes a list of gene symbols, RGD IDs, GenBank accession numbers, Ensembl identifiers, and/or a chromosomal region, and retrieves annotation data from RGD. This tool will retrieve annotations from any or all ontologies used at RGD for genes and their orthologs, as well as links to additional information at other databases.

MetaboAnalyst 2.0 is a web-based resource that allows high-throughput metabolomic data analysis from a user-friendly interface. For more information of this tool, please see our blog post at http://blog.openhelix.eu/?p=13481

For more information about this resource, see our blog post at URL http://blog.openhelix.eu/?p=13147. We visit both IMG/M (IMG with Microbiome Samples) (briefly) and the Integrated Microbial Genomes-Human Microbiome Project, or IMG/HMP in today’s tip.

Today's tip of the week is on the Galaxy Toolshed, to find more read the blog post and tip at: http://blog.openhelix.eu/?p=12988

Today's tip of the week is on Chromohub, an annotated phylogeny of chromatin mediated signaling genes. For more information, check out our blog post at http://blog.openhelix.eu/?p=12671

For more information about this resource, see our blog post at URL: http://blog.openhelix.com/?p=12634 In the tip I will feature the newly organized content hubs over at the Protein Structure Initiative's Structural Biology Knowledgebase, or PSI SBKB. These scientific hubs, organized by content, make it easy for users to access specific content offered by both the SBKB and the PSI as a whole.

Learn how to use biomedical nomenclature to name to strains that you or your research group develop or to find a strain that meets your research needs with this informative tutorial. Using effective nomenclature will help to disambiguate your data will help you to present it to your colleagues in a clear and meaningful way. For a copy of RGNC’s complete set of rules on nomenclature, visit: http://rgd.mcw.edu/nomen/nomen.shtml Or contact us at: rgd.data@mcw.edu

Biomedical nomenclature is a valuable and ever-expanding tool that researchers can use in order to more easily learn about, refer to or retrieve any particular parts of the genome using the literature or through the use of curated data and a variety of tools, such as the ones available in RGD. This video showcases both QTL and marker nomenclature. For a copy of RGNC’s complete set of rules on nomenclature, visit: http://rgd.mcw.edu/nomen/nomen.shtml Or contact us at:...